Search results for "marine species"
showing 10 items of 13 documents
Assessing cetacean surveys throughout the Mediterranean Sea: a gap analysis in environmental space
2018
Heterogeneous data collection in the marine environment has led to large gaps in our knowledge of marine species distributions. To fill these gaps, models calibrated on existing data may be used to predict species distributions in unsampled areas, given that available data are sufficiently representative. Our objective was to evaluate the feasibility of mapping cetacean densities across the entire Mediterranean Sea using models calibrated on available survey data and various environmental covariates. We aggregated 302,481 km of line transect survey effort conducted in the Mediterranean Sea within the past 20 years by many organisations. Survey coverage was highly heterogeneous geographicall…
Historical and current diversity patterns of mediterranean marine species
2021
In this issue, the biodiversity in the Mediterranean Sea has been described at a synchronic and a diachronic level, highlighting the past two centuries for which museum collections can provide overlooked information. Historical records are preserved for the major marine taxa, knowledge of which would greatly benefit from employing specimens and data collected in the past. All of the articles review the current status of the marine diversity of species belonging to several taxonomic groups (seagrasses, macroalgae, sponges, polychaetes, bivalves, sharks, fishes, mammals) and explore the ecological and conservation implications of some of the most threatened ones.
Demographic responses to protection from harvesting in a long-lived marine species
2021
Abstract Marine protected areas (MPAs) are usually considered to have positive effects on the recovery of over-exploited populations. However, resolving the extent to which MPAs function according to their conservation goals requires that essential demographic information such as individual survival and population size are quantified. To this end, we analyzed a 16-year replicated mark-recapture study on European lobster (Homarus gammarus, n = 8793) conducted at several protected and unprotected sites in southern Norway, quantifying the impact of MPAs on local population dynamics by means of a “before-after control-impact” study approach (BACI). Lobster survival and abundance were estimated …
“Out of the can”: a draft genome assembly, liver transcriptome, and nutrigenomics of the european sardine, sardina pilchardus
2018
Clupeiformes, such as sardines and herrings, represent an important share of worldwide fisheries. Among those, the European sardine (Sardina pilchardus, Walbaum 1792) exhibits significant commercial relevance. While the last decade showed a steady and sharp decline in capture levels, recent advances in culture husbandry represent promising research avenues. Yet, the complete absence of genomic resources from sardine imposes a severe bottleneck to understand its physiological and ecological requirements. We generated 69 Gbp of paired-end reads using Illumina HiSeq X Ten and assembled a draft genome assembly with an N50 scaffold length of 25,579 bp and BUSCO completeness of 82.1% (Actinoptery…
Baseline port surveys for invasive marine species in the Northeastern Baltic
2006
Marine ecosystems around the world are being transformed and degraded by non-indigenous species, which affect the structure and function of the ecosystem, causing major ecological and economic implications. Ships have been recognized as a major vector for the introduction of non-indigenous harmful organisms, carrying them in ballast water tanks and sediments. Activities to prevent and mitigate the impact of invasive alien species have to be based on cooperation. Financed by Phare Cross Border Co-operation Programme in the Baltic Sea Region (2005–2006) Latvia together with Estonia will focus on baseline port surveys for non-indigenous species in the north-eastern part of the Baltic Sea.
PESI - a taxonomic backbone for Europe
2015
Reliable taxonomy underpins communication in all of biology, not least nature conservation and sustainable use of ecosystem resources. The flexibility of taxonomic interpretations, however, presents a serious challenge for end-users of taxonomic concepts. Users need standardised and continuously harmonised taxonomic reference systems, as well as highquality and complete taxonomic data sets, but these are generally lacking for nonspecialists. The solution is in dynamic, expertly curated web-based taxonomic tools. The Pan-European Species-directories Infrastructure (PESI) worked to solve this key issue by providing a taxonomic e-infrastructure for Europe. It strengthened the relevant social (…
DNA barcoding for species assignment: the case of Mediterranean marine fishes
2014
Background: DNA barcoding enhances the prospects for species-level identifications globally using a standardized and authenticated DNA-based approach. Reference libraries comprising validated DNA barcodes (COI) constitute robust datasets for testing query sequences, providing considerable utility to identify marine fish and other organisms. Here we test the feasibility of using DNA barcoding to assign species to tissue samples from fish collected in the central Mediterranean Sea, a major contributor to the European marine ichthyofaunal diversity. Methodology/Principal Findings: A dataset of 1278 DNA barcodes, representing 218 marine fish species, was used to test the utility of DNA barcodes…
New research at Riņņukalns, a Neolithic freshwater shell midden in northern Latvia
2014
The prehistoric shell middens of Atlantic Europe consist of marine molluscs, but the eastern Baltic did not have exploitable marine species. Here the sole recorded shell midden, at Riņņukalns in Latvia, is on an inland lake and is formed of massive dumps of freshwater shells. Recent excavations indicate that they are the product of a small number of seasonal events during the later fourth millennium BC. The thickness of the shell deposits suggests that this was a special multi-purpose residential site visited for seasonal aggregations by pottery-using hunter-gatherer communities on the northern margin of Neolithic Europe.
Dynamic Energy Budget parameters of Brachidontes pharaonis, a lessepsian bivalve in the Mediterranean Sea.
2014
Dynamic Energy Budget (DEB) models are used for describing the flow of energy through organisms. The most important and powerful aspect of DEB theory is that inter-specific differences can be captured in the same model by comparison of parameter values. However, estimation of these parameters is complicated and can often not be done with direct empirical measurements alone. Here, we present DEB parameter estimates obtained by combining both experimental and literature data for the filter feeder Brachidontes pharaonis, which is considered one among the 100 worst invasive marine species in the Mediterranean Basin. We utilize a statistical procedure based on the covariation method to obtain pa…
Morphometric diversity of the mussel Brachidontes pharaonis in different coastal environments
2010
In the debate on how and why biodiversity evolves spatially and temporally and in an attempt to assess the further effects of anthropogenic activities, the ability of marine invertebrate to express a large spectrum of phenotypical plasticity can have a central role. The ability of a single genotype to produce more than one alternative form of morphology and/or physiological state should be larger in species living in highly changing waters like shallow habitats. Invertebrates, there, usually experience ample changes of temperature and food availability on annual, seasonal, diurnal and hourly bases which are the two main drivers leading the life histories of these organisms. In such circumst…